Items where Author / Artist / Editor is "Albrecht, Andreas A."

Article

Zampetaki, Anna, Albrecht, Andreas A. and Steinhofel, Kathleen (2018) Long non-coding RNA structure and function: Is there a link? Frontiers in Physiology, 9 , 1201. ISSN 1664-042X [Article] (doi:10.3389/fphys.2018.01201)

Lataniotis, Lazaros, Albrecht, Andreas A., Kok, Fatma, Monfries, Clinton A. L., Benedetti, Lorena, Lawson, Nathan D., Hughes, Simon M., Steinhofel, Kathleen, Mayr, Manuel and Zampetaki, Anna (2018) Crispr/Cas9 gene editing reveals novel tertiary constraints in clustered miRNA processing. Cardiovascular Research, 114 (Supp_1) . S1-S1. ISSN 0008-6363 [Article] (doi:10.1093/cvr/cvy060)

Lataniotis, Lazaros, Albrecht, Andreas A., Kok, Fatma O., Monfries, Clinton A. L., Benedetti, Lorena, Lawson, Nathan D., Hughes, Simon M., Steinhofel, Kathleen, Mayr, Manuel and Zampetaki, Anna (2017) Crispr/Cas9 editing reveals novel mechanisms of clustered microRNA regulation and function. Scientific Reports, 7 , 8585. pp. 1-14. ISSN 2045-2322 [Article] (doi:10.1038/s41598-017-09268-0)

Lataniotis, Lazaros, Albrecht, Andreas A., Kok, Fatma, Monfries, Clinton, Benedetti, Lorena, Lawson, Nathan D., Hughes, Simon M., Steinhofel, Kathleen, Mayr, Manuel and Zampetaki, Anna (2017) Crispr/Cas9 gene editing reveals novel tertiary constraints in clustered mirna processing. Heart, 103 (5) . A133. ISSN 1468-201X [Article] (doi:10.1136/heartjnl-2017-311726.193)

Day, Luke, Souki, Ouala Abdelhadi Ep, Albrecht, Andreas A. and Steinhofel, Kathleen (2016) Random versus deterministic descent in RNA energy landscape analysis. Advances in Bioinformatics, 2016 . ISSN 1687-8035 [Article] (doi:10.1155/2016/9654921)

Albrecht, Andreas A., Day, Luke, Souki, Ouala Abdelhadi Ep and Steinhofel, Kathleen (2016) A new heuristic method for approximating the number of local minima in partial RNA energy landscapes. Computational Biology and Chemistry, 60 . pp. 43-52. ISSN 1476-9271 [Article] (doi:10.1016/j.compbiolchem.2015.11.002)

Lai, Hung-Ming, Albrecht, Andreas A. and Steinhofel, Kathleen (2015) iRDA: a new filter towards predictive, stable, and enriched candidate genes. BMC Genomics, 16 . ISSN 1471-2164 [Article] (doi:10.1186/s12864-015-2129-5)

Lai, Hung-Ming, Otzturk, Celal, Albrecht, Andreas A. and Steinhofel, Kathleen (2015) A new vision of evaluating gene expression signatures. Computational Biology and Chemistry, 57 . pp. 54-60. ISSN 1476-9271 [Article] (doi:10.1016/j.compbiolchem.2015.02.004)

Day, Luke, Abdelhadi Ep Souki, Ouala, Albrecht, Andreas A. and Steinhofel, Kathleen (2014) Accessibility of microRNA binding sites in meta-stable RNA secondary structures in the presence of SNPs. Bioinformatics, 30 (3) . pp. 343-352. ISSN 1367-4803 [Article] (doi:10.1093/bioinformatics/btt695)

Maher, Brian, Albrecht, Andreas A., Loomes, Martin J., Yang, Xin-She ORCID: https://orcid.org/0000-0001-8231-5556 and Steinhofel, Kathleen (2014) A Firefly-inspired method for protein structure prediction in lattice models. Biomolecules, 4 (1) . pp. 56-75. ISSN 2218-273X [Article] (doi:10.3390/biom4010056)

Lai, Hung-Ming, Albrecht, Andreas A. and Steinhofel, Kathleen (2013) Gene selection guided by feature interdependence. World Academy of Science, Engineering and Technology (WASET) (79) . pp. 1432-1438. ISSN 2070-3724 [Article]

Sahoo, Sudhakar and Albrecht, Andreas A. (2012) Approximating the set of local minima in partial RNA folding landscapes. Bioinformatics, 28 (4) . pp. 523-530. ISSN 1367-4803 [Article] (doi:10.1093/bioinformatics/btr715)

Dayem Ullah, Abu Z. M., Sahoo, Sudhakar, Steinhofel, Kathleen and Albrecht, Andreas A. (2012) Derivative scores from site accessibility and ranking of miRNA target predictions. International Journal of Bioinformatics Research and Applications, 8 (3/4) . pp. 171-191. ISSN 1744-5485 [Article] (doi:10.1504/IJBRA.2012.048966)

Sahoo, Sudhakar and Albrecht, Andreas A. (2010) Ranking of microRNA target prediction scores by Pareto front analysis. Computational Biology and Chemistry, 34 (5-6) . pp. 284-292. ISSN 1476-9271 [Article] (doi:10.1016/j.compbiolchem.2010.09.005)

Albrecht, Andreas A., Chashkin, Alexander V., Iliopoulos, Costas S., Kasim-Zade, Oktay M., Lappas, Georgios and Steinhofel, Kathleen K. (2010) A note on a priori estimations of classification circuit complexity. Fundamenta Informaticae, 104 (3) . pp. 201-217. ISSN 0169-2968 [Article] (doi:10.3233/FI-2010-344)

Albrecht, Andreas A., Kapsokalivas, L. and Steinhofel, K. (2010) Uphill unfolding of native protein conformations in cubic lattices. Journal of Computational Science, 1 (1) . pp. 6-12. ISSN 1877-7503 [Article] (doi:10.1016/j.jocs.2010.01.001)

Albrecht, Andreas A., Lane, P.C.R. and Steinhofel, K. (2010) Analysis of local search landscapes for k-SAT instances. Mathematics in Computer Science, 3 (4) . pp. 465-488. ISSN 1661-8270 [Article] (doi:10.1007/s11786-010-0040-7)

Kapsokalivas, L., Gan, X., Albrecht, Andreas A. and Steinhöfel, K. (2009) Population-based local search for protein folding simulation in the MJ energy model and cubic lattices. Computational Biology and Chemistry, 33 (4) . pp. 283-294. ISSN 1476-9271 [Article] (doi:10.1016/j.compbiolchem.2009.06.006)

Zahrani, M. S., Loomes, Martin J., Malcolm, J. A. and Albrecht, Andreas A. (2008) A local search heuristic for bounded-degree minimum spanning trees. Engineering Optimization, 40 (12) . pp. 1115-1135. ISSN 0305-215X [Article] (doi:10.1080/03052150802317440)

Albrecht, Andreas A., Skaliotis, A. and Steinhöfel, K. (2008) Stochastic protein folding simulation in the three-dimensional HP-model. Computational Biology and Chemistry, 32 (4) . pp. 248-255. ISSN 1476-9271 [Article] (doi:10.1016/j.compbiolchem.2008.03.004)

Zahrani, M. S., Loomes, Martin J., Malcolm, J. A., Ullah, A. Z. M. Dayem, Steinhoefel, K. and Albrecht, Andreas A. (2008) Genetic local search for multicast routing with pre-processing by logarithmic simulated annealing. Computers & Operations Research, 35 (6) . pp. 2049-2070. ISSN 0305-0548 [Article] (doi:10.1016/j.cor.2006.10.001)

Steinhofel, K., Skaliotis, A. and Albrecht, Andreas A. (2007) Relating time complexity of protein folding simulation to approximations of folding time. Computer Physics Communications, 176 (7) . pp. 465-470. ISSN 0010-4655 [Article] (doi:10.1016/j.cpc.2006.12.002)

Albrecht, Andreas A. (2006) Stochastic local search for the Feature Set problem, with applications to microarray data. Applied Mathematics and Computation, 183 (2) . pp. 1148-1164. ISSN 0096-3003 [Article] (doi:10.1016/j.amc.2006.05.128)

Loomes, Martin J., Albrecht, Andreas A., Malcolm, J. A. and Zahrani, M. S. (2006) Landscape analysis for multicast routing. Computer Communications, 30 (1) . pp. 101-116. ISSN 0140-3664 [Article] (doi:10.1016/j.comcom.2006.07.019)

Albrecht, Andreas A. (2006) A stopping criterion for logarithmic simulated annealing. Computing, 78 (1) . pp. 55-79. ISSN 0010-485X [Article] (doi:10.1007/s00607-006-0167-1)

Lappas, G., Frank, R. J. and Albrecht, Andreas A. (2006) A computational study on circuit size versus circuit depth. International Journal on Artificial Intelligence Tools, 15 (2) . pp. 143-162. ISSN 0218-2130 [Article] (doi:10.1142/S0218213006002606)

Hein, Eike, Albrecht, Andreas A., Melzer, Daniela, Steinhofel, Kathleen, Rogalla, Patrick, Hamm, Bernd and Taupitz, Matthias (2005) Computer-assisted diagnosis of focal liver lesions on CT images: evaluation of the perceptron algorithm. Academic Radiology, 12 (9) . 1205 -1210. ISSN 1076-6332 [Article] (doi:10.1016/j.acra.2005.05.009)

Albrecht, Andreas A. and Lappas, Georgios (2004) Classification improvement by an extended depth LSA machine. WSEAS Transactions on Systems, 3 (3) . pp. 1120-1125. ISSN 1109-2777 [Article]

Albrecht, Andreas A. and Lappas, Georgios (2004) On the evaluation of dividing samples for training an extended depth LSA machine. WSEAS Transactions on Systems, 3 (3) . pp. 1251-1257. ISSN 1109-2777 [Article]

Steinhofel, Kathleen, Albrecht, Andreas A. and Wong, C. K. (2003) An experimental analysis of local minima to improve neighbourhood search. Computers and Operations Research, 30 (14) . pp. 2157-2173. ISSN 0305-0548 [Article] (doi:10.1016/S0305-0548(02)00128-4)

Albrecht, Andreas A., Vinterbo, Staal A. and Ohno-Machado, Lucila (2003) An Epicurean learning approach to gene-expression data classification. Artificial Intelligence in Medicine, 28 (1) . pp. 75-87. ISSN 0933-3657 [Article] (doi:10.1016/S0933-3657(03)00036-8)

Loomes, Martin J., Albrecht, Andreas A., Steinhoefel, K. and Taupitz, M. (2002) Adaptive simulated annealing for CT image classification. International Journal of Pattern Recognition and Artificial Intelligence, 16 (5) . pp. 573-588. ISSN 0218-0014 [Article]

Steinhofel, Kathleen, Albrecht, Andreas A. and Wong, C. K. (2002) The convergence of stochastic algorithms solving flow shop scheduling. Theoretical Computer Science, 285 (1) . pp. 101-117. ISSN 0304-3975 [Article] (doi:10.1016/S0304-3975(01)00293-6)

Albrecht, Andreas A., Hein, E., Steinhofel, Kathleen, Taupitz, M. and Wong, C. K. (2002) Bounded-depth threshold circuits for computer-assisted CT image classification. Artificial Intelligence in Medicine, 24 (2) . pp. 179-192. ISSN 0933-3657 [Article] (doi:10.1016/S0933-3657(01)00101-4)

Steinhofel, Kathleen, Albrecht, Andreas A. and Wong, C. K. (2002) Fast parallel heuristics for the job shop scheduling problem. Computers and Operations Research, 29 (2) . pp. 151-169. ISSN 0305-0548 [Article] (doi:10.1016/S0305-0548(00)00063-0)

Albrecht, Andreas A. and Wong, C. K. (2001) Combining the perceptron algorithm with logarithmic simulated annealing. Neural Processing Letters, 14 (1) . pp. 75-83. ISSN 1370-4621 [Article] (doi:10.1023/A:1011369322571)

Albrecht, Andreas A., Steinhofel, Kathleen, Taupitz, M. and Wong, C. K. (2001) Logarithmic simulated annealing for X-ray diagnosis. Artificial Intelligence in Medicine, 22 (3) . pp. 249-260. ISSN 0933-3657 [Article] (doi:10.1016/S0933-3657(00)00112-3)

Steinhofel, Kathleen, Albrecht, Andreas A. and Wong, C. K. (1999) Two simulated annealing-based heuristics for the job shop scheduling problem. European Journal of Operational Research, 118 (3) . pp. 524-548. ISSN 0377-2217 [Article] (doi:10.1016/S0377-2217(98)00326-9)

Yan, G. Y., Albrecht, Andreas A., Young, G. H. F. and Wong, C. K. (1997) The Steiner tree problem in orientation metrics. Journal of Computer and System Sciences, 55 (3) . pp. 529-546. ISSN 0022-0000 [Article] (doi:10.1006/jcss.1997.1513)

Albrecht, Andreas A., Cheung, S. K., Leung, K. S. and Wong, C. K. (1997) Computing elastic moduli of two-dimensional random networks of rigid and nonrigid bonds by simulated annealing. Mathematics and Computers in Simulation, 44 (2) . pp. 187-215. ISSN 0378-4754 [Article] (doi:10.1016/S0378-4754(97)00072-4)

Albrecht, Andreas A., Cheung, S. K., Leung, K. S. and Wong, C. K. (1997) Stochastic simulations of two-dimensional composite packings. Journal of Computational Physics, 136 (2) . pp. 559-579. ISSN 0021-9991 [Article] (doi:10.1006/jcph.1997.5781)

Albrecht, Andreas A., Cheung, S. K., Hui, K. C., Leung, K. S. and Wong, C. K. (1997) Optimal placements of flexible objects. I. Analytical results for the unbounded case. IEEE Transactions On Computers, 46 (8) . pp. 890-904. ISSN 0018-9340 [Article] (doi:10.1109/12.609278)

Albrecht, Andreas A., Cheung, S. K., Hui, K. C., Leung, K. S. and Wong, C. K. (1997) Optimal placements of flexible objects. II. A simulated annealing approach for the bounded case. IEEE Transactions on Computers, 46 (8) . pp. 905-929. ISSN 0018-9340 [Article] (doi:10.1109/12.609279)

Book Section

Lai, Hung-Ming, Albrecht, Andreas A. and Steinhöfel, Kathleen (2014) A framework for high-throughput gene signatures with microarray-based brain cancer gene expression profiling data. In: Proceedings of: 6th International Conference on Agents and Artificial Intelligence (ICAART 2014 ) At Angers, France. Scitepress, pp. 211-220. . [Book Section] (doi:10.5220/0004926002110220)

Albrecht, Andreas A., Lane, Peter C.R. and Steinhofel, Kathleen (2008) Combinatorial landscape analysis for k-SAT instances. In: 2008 IEEE Congress on Evolutionary Computation (IEEE World Congress on Computational Intelligence). IEEE, pp. 2498-2504. ISBN 9781424418220. [Book Section] (doi:10.1109/CEC.2008.4631133)

Conference or Workshop Item

Lai, Hung-Ming, Albrecht, Andreas A. and Steinhofel, Kathleen (2015) Robust signature discovery for affymetrix GeneChip® cancer classification. Agents and Artificial Intelligence: 6th International Conference, ICAART 2014, Angers, France, March 6-8, 2014, Revised Selected Papers. In: 6th International Conference on Agents and Artificial Intelligence, 6-8 Mar 2014, Angers, France. ISBN 9783319252094. ISSN 0302-9743 [Conference or Workshop Item] (doi:10.1007/978-3-319-25210-0_20)

Souki, Ouala Abdelhadi Ep, Day, Luke, Albrecht, Andreas A. and Steinhofel, Kathleen (2015) MicroRNA target prediction based upon metastable RNA secondary structures. Bioinformatics and Biomedical Engineering: Third International Conference, IWBBIO 2015, Granada, Spain, April 15-17, 2015. Proceedings, Part II. In: 3rd International Work-Conference on Bioinformatics and Biomedical Engineering (IWBBIO 2015), 15-17 Apr 2015, Granada, Spain. ISBN 9783319164793. ISSN 0302-9743 [Conference or Workshop Item] (doi:10.1007/978-3-319-16480-9_45)

Katerinchuk, Valeri, Albrecht, Andreas A. and Steinhofel, Kathleen (2014) Energy-efficient multicast routing by using genetic local search. In: 6th International Conference on Agents and Artificial Intelligence, 06-08 Mar 2014, Angers, France. . [Conference or Workshop Item]

Other

Zampetaki, Anna, Albrecht, Andreas A. and Steinhofel, Kathleen (2019) Long non-coding RNA structure and function: Is there a link? [Corrigendum]. Frontiers in Physiology, Frontiers Research Foundation. [Other] (doi:10.3389/fphys.2019.01127)